Uses of Package
org.jmol.util
Packages that use org.jmol.util
Package
Description
Provides a software implementation of complete 3D graphics engine
for rendering molecules and associated shapes.
Jmol SMILES, Jmol SMARTS, Jmol bioSMILES, and Jmol bioSMARTS
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Classes in org.jmol.util used by jspecview.common
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Classes in org.jmol.util used by jspecview.java
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Classes in org.jmol.util used by jspecview.js2d
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Classes in org.jmol.util used by org.jmol.adapter.smarter
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Classes in org.jmol.util used by org.jmol.adapter.writers
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Classes in org.jmol.util used by org.jmol.apiClassDescriptionThe BoxInfo class holds critical information about boundboxes.Provides font support using a int fid (Font ID) as an index into font table.The Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points) associated symmetry operation (generating equivalent atoms in UnitCell.java)A class to allow for more complex vibrations and associated phenomena, such as modulated crystals.
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Classes in org.jmol.util used by org.jmol.appletjsClassDescriptionA collection of all methods necessary for initialization of and communication with the applet.
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Classes in org.jmol.util used by org.jmol.awt
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Classes in org.jmol.util used by org.jmol.awtjs
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Classes in org.jmol.util used by org.jmol.awtjs2d
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Classes in org.jmol.util used by org.jmol.exportClassDescriptionProvides font support using a int fid (Font ID) as an index into font table.
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Classes in org.jmol.util used by org.jmol.g3dClassDescriptionProvides font support using a int fid (Font ID) as an index into font table.
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Classes in org.jmol.util used by org.jmol.jvxl.calcClassDescriptionAn adaptation of Marching Cubes that allows for indicating edges on triangles.
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Classes in org.jmol.util used by org.jmol.jvxl.data
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Classes in org.jmol.util used by org.jmol.jvxl.readers
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Classes in org.jmol.util used by org.jmol.modelsetClassDescriptionThe BoxInfo class holds critical information about boundboxes.Provides font support using a int fid (Font ID) as an index into font table.an independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom for use in finding molecules in models and SMILES stringsThe Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points) associated symmetry operation (generating equivalent atoms in UnitCell.java)minimal bond interface for SMILES and CIPJust the bare minimum for CIP, and non-BioSMILESA class to allow for more complex vibrations and associated phenomena, such as modulated crystals.
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Classes in org.jmol.util used by org.jmol.quantum
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Classes in org.jmol.util used by org.jmol.renderClassDescriptionProvides font support using a int fid (Font ID) as an index into font table.The Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points) associated symmetry operation (generating equivalent atoms in UnitCell.java)
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Classes in org.jmol.util used by org.jmol.shapeClassDescriptionProvides font support using a int fid (Font ID) as an index into font table.
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Classes in org.jmol.util used by org.jmol.shapecgo
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Classes in org.jmol.util used by org.jmol.shapespecial
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Classes in org.jmol.util used by org.jmol.shapesurface
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Classes in org.jmol.util used by org.jmol.smilesClassDescriptionan independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom for use in finding molecules in models and SMILES stringsminimal bond interface for SMILES and CIPJust the bare minimum for CIP, and non-BioSMILES
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Classes in org.jmol.util used by org.jmol.symmetryClassDescriptionThe Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points) associated symmetry operation (generating equivalent atoms in UnitCell.java)general-purpose simple unit cell for calculations and as a super-class of unitcell, which is only part of Symmetry allows one-dimensional (polymer) and two-dimensional (slab) periodicity
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Classes in org.jmol.util used by org.jmol.utilClassDescriptionA class to represent and produce Brillouin zone polyhedra and Wigner-Seitz cells.Provides font support using a int fid (Font ID) as an index into font table.an independent class utilizing only org.jmol.api.JmolNode, not org.jmol.modelset.Atom for use in finding molecules in models and SMILES stringsInterface used for the logging mechanism.A class to properly cap a convoluted, closed slice of an isosurface inspired by: Computational Geometry: Algorithms and Applications Mark de Berg, Marc van Kreveld, Mark Overmars, and Otfried Schwarzkopf Springer-Verlag, Berlin Heidelberg 1997 Chapter 3.A class to allow for more complex vibrations and associated phenomena, such as modulated crystals, including Fourier series, Crenel functions, and sawtooth functionsA class to group a set of modulations for an atom as a "vibration" Extends V3 so that it will be a displacement, and its value will be an occupancyThe Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points) associated symmetry operation (generating equivalent atoms in UnitCell.java)All functions.minimal bond interface for SMILES and CIPJust the bare minimum for CIP, and non-BioSMILESgeneral-purpose simple unit cell for calculations and as a super-class of unitcell, which is only part of Symmetry allows one-dimensional (polymer) and two-dimensional (slab) periodicityAn adaptation of Marching Cubes that allows for indicating edges on triangles.A class to allow for more complex vibrations and associated phenomena, such as modulated crystals.
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Classes in org.jmol.util used by org.jmol.viewerClassDescriptionThe BoxInfo class holds critical information about boundboxes.Provides font support using a int fid (Font ID) as an index into font table.The Point3fi class allows storage of critical information involving an atom, picked bond, or measurement point, including: xyz position screen position screen radius (-1 for a simple point) index (for atoms or for an associated bond that has be picked) associated modelIndex (for measurement points) associated symmetry operation (generating equivalent atoms in UnitCell.java)A class to allow for more complex vibrations and associated phenomena, such as modulated crystals.
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Classes in org.jmol.util used by org.openscience.jvxl.simplewriterClassDescriptionAn adaptation of Marching Cubes that allows for indicating edges on triangles.