Package org.jmol.util

Class Vibration

java.lang.Object
javajs.util.T3
javajs.util.V3
org.jmol.util.Vibration
All Implemented Interfaces:
Serializable, JSONEncodable
Direct Known Subclasses:
ModulationSet
public class Vibration extends V3
A class to allow for more complex vibrations and associated phenomena, such as modulated crystals. In the case of modulations, ModulationSet extends Vibration and is implemented that way, and, as well, magnetic spin is also a form of Vibration that may have an associated ModulationSet, as indicated here
Author:
Bob Hanson hansonr@stolaf.edu
See Also:

  • Field Details

    • twoPI

      protected static final double twoPI
      See Also:

    • TYPE_VIBRATION

      public static final int TYPE_VIBRATION
      See Also:

    • TYPE_SPIN

      public static final int TYPE_SPIN
      See Also:

    • TYPE_WYCKOFF

      public static final int TYPE_WYCKOFF
      See Also:

    • modDim

      public int modDim
      modDim will be > 0 for modulation

    • modScale

      public float modScale

    • magMoment

      public float magMoment

    • showTrace

      public boolean showTrace

    • isFractional

      public boolean isFractional

    • v0

      public V3 v0

    • tracePt

      public int tracePt

    • symmform

      public String symmform

    • isFrom000

      public boolean isFrom000

  • Constructor Details

    • Vibration

      public Vibration()

  • Method Details

    • setCalcPoint

      public T3 setCalcPoint(T3 pt, T3 t456, float scale, float modulationScale)
      Parameters:
      pt -
      t456 -
      scale -
      modulationScale -
      Returns:
      pt

    • getInfo

      public void getInfo(Map<String,Object> info)

    • clone

      public Object clone()
      Overrides:
      clone in class Object

    • setXYZ

      public void setXYZ(T3 vib)

    • setV0

      public void setV0()

    • setType

      public Vibration setType(int type)

    • isNonzero

      public boolean isNonzero()

    • getOccupancy100

      public int getOccupancy100(boolean isTemp)
      Parameters:
      isTemp - used only in ModulationSet when calculating actual display offset
      Returns:
      Integer.MIN_VALUE if not applicable, occupancy if enabled, -occupancy if not enabled

    • startTrace

      public void startTrace(int n)

    • addTracePt

      public P3[] addTracePt(int n, Point3fi ptNew)

    • getApproxString100

      public String getApproxString100()

    • rotateSpin

      public void rotateSpin(M3 matInv, M3 rot, M3 dRot, Atom a)

    • rotateModelSpinVectors

      public int rotateModelSpinVectors(ModelSet ms, int modelIndex, M3 rot, boolean isdx)

    • find

      public static Atom find(ModelSet modelSet, BS bs, Vibration v0)