Package org.jmol.util

Class Parser

java.lang.Object
org.jmol.util.Parser
public class Parser extends Object

  • Constructor Details

    • Parser

      public Parser()

  • Method Details

    • parseStringInfestedFloatArray

      public static int parseStringInfestedFloatArray(String str, BS bs, float[] data)
      parses a "dirty" string for floats. If there are non-float tokens, they are ignored. A bitset is used to assign values only to specific atoms in the set, not changing the values of the data array for other atoms. thus, a data set can be incrementally added to in this way.
      Parameters:
      str - the string to parse
      bs - the atom positions to assign
      data - the (sparce) array to fill
      Returns:
      number of floats

    • parseFloatArrayBsData

      public static int parseFloatArrayBsData(String[] tokens, BS bs, float[] data)

    • parseFloatArrayFromMatchAndField

      public static float[] parseFloatArrayFromMatchAndField(String str, BS bs, int fieldMatch, int fieldMatchColumnCount, int[] matchData, int field, int fieldColumnCount, float[] data, int firstLine)
      the major lifter here.
      Parameters:
      str - string containing the data
      bs - selects specific rows of the data
      fieldMatch - a free-format field pointer, or a column pointer
      fieldMatchColumnCount - specifies a column count -- not free-format
      matchData - an array of data to match (atom numbers)
      field - a free-format field pointer, or a column pointer
      fieldColumnCount - specifies a column count -- not free-format
      data - float array to modify or null if size unknown
      firstLine - first line to parse (1 indicates all)
      Returns:
      data

    • fixDataString

      public static String fixDataString(String str)

    • markLines

      public static int[] markLines(String data, char eol)