Package org.jmol.modelsetbio

Class AminoMonomer

java.lang.Object
org.jmol.modelset.Group
org.jmol.modelsetbio.Monomer
org.jmol.modelsetbio.AlphaMonomer
org.jmol.modelsetbio.AminoMonomer
All Implemented Interfaces:
Structure
public class AminoMonomer extends AlphaMonomer

  • Constructor Details

    • AminoMonomer

      protected AminoMonomer()

  • Method Details

    • getNitrogenAtom

      public Atom getNitrogenAtom()
      Overrides:
      getNitrogenAtom in class Group

    • getCarbonylCarbonAtom

      public Atom getCarbonylCarbonAtom()

    • getCarbonylOxygenAtom

      public Atom getCarbonylOxygenAtom()
      Overrides:
      getCarbonylOxygenAtom in class Group

    • resetHydrogenPoint

      public void resetHydrogenPoint()

    • getExplicitNH

      public Atom getExplicitNH()

    • getNHPoint

      public boolean getNHPoint(P3 aminoHydrogenPoint, V3 vNH, boolean jmolHPoint, boolean dsspIgnoreHydrogens)

    • getQuaternion

      public Quat getQuaternion(char qType)
      Overrides:
      getQuaternion in class AlphaMonomer
      Parameters:
      qType -
      Returns:
      quaternion

    • getStructureId

      public String getStructureId()
      Overrides:
      getStructureId in class Monomer

    • getProteinStructureTag

      public String getProteinStructureTag()
      Overrides:
      getProteinStructureTag in class Group

    • getBSSideChain

      public BS getBSSideChain()
      Overrides:
      getBSSideChain in class Group