Package org.jmol.modelset

Class AtomIteratorWithinModel

java.lang.Object
org.jmol.modelset.AtomIteratorWithinModel
All Implemented Interfaces:
AtomIndexIterator
Direct Known Subclasses:
AtomIteratorWithinModelSet
public class AtomIteratorWithinModel extends Object implements AtomIndexIterator

  • Field Details

    • cubeIterator

      protected CubeIterator cubeIterator

    • bspf

      protected Bspf bspf

    • modelIndex

      protected int modelIndex

  • Method Details

    • setModel

      public void setModel(ModelSet modelSet, int modelIndex, int firstModelAtom, int atomIndex, T3 center, float distance, RadiusData rd)
      Specified by:
      setModel in interface AtomIndexIterator
      Parameters:
      modelSet -
      modelIndex -
      firstModelAtom - an offset used in the AtomIteratorWithinSet only
      atomIndex -
      center -
      distance -
      rd -

    • setCenter

      public void setCenter(T3 center, float distance)
      Specified by:
      setCenter in interface AtomIndexIterator

    • setCenter2

      protected void setCenter2(T3 center, float distance)

    • hasNext

      public boolean hasNext()
      Specified by:
      hasNext in interface AtomIndexIterator

    • hasNext2

      protected boolean hasNext2()

    • next

      public int next()
      Specified by:
      next in interface AtomIndexIterator

    • foundDistance2

      public float foundDistance2()
      Specified by:
      foundDistance2 in interface AtomIndexIterator

    • addAtoms

      public void addAtoms(BS bsResult)
      turns this into a SPHERICAL iterator for "within Distance" measures
      Specified by:
      addAtoms in interface AtomIndexIterator
      Parameters:
      bsResult -

    • release

      public void release()
      Specified by:
      release in interface AtomIndexIterator

    • getPosition

      public P3 getPosition()
      Specified by:
      getPosition in interface AtomIndexIterator