Uses of Class jspecview.common.Spectrum (Jmol 16.3.55 API)

Packages that use Spectrum

Package

Description

jspecview.api

jspecview.app

jspecview.appletjs

jspecview.application

Uses of Spectrum in jspecview.api

Methods in jspecview.api that return Spectrum

Modifier and Type

Method

Description

Spectrum

AnnotationData.getSpectrum()

Methods in jspecview.api with parameters of type Spectrum

Modifier and Type

Method

Description

String

JSVExporter.exportTheSpectrum(JSViewer viewer, ExportType type, OC out, Spectrum spec, int startIndex, int endIndex, PanelData pd, boolean asBase64)

int

VisibleInterface.getColour(Spectrum spec, boolean asFitted)

JSVPanel

ScriptInterface.siGetNewJSVPanel(Spectrum spec)

Method parameters in jspecview.api with type arguments of type Spectrum

Modifier and Type

Method

Description

JSVPanel

AppletFrame.getJSVPanel(JSViewer viewer, Lst<Spectrum> specs)

JSVPanel

ScriptInterface.siGetNewJSVPanel2(Lst<Spectrum> specs)

void

ScriptInterface.siOpenDataOrFile(Object data, String name, Lst<Spectrum> specs, String url, int firstSpec, int lastSpec, boolean isAppend, String script, String id)
Uses of Spectrum in jspecview.app

Methods in jspecview.app with parameters of type Spectrum

Modifier and Type

Method

Description

JSVPanel

JSVApp.siGetNewJSVPanel(Spectrum spec)

Method parameters in jspecview.app with type arguments of type Spectrum

Modifier and Type

Method

Description

JSVPanel

JSVApp.siGetNewJSVPanel2(Lst<Spectrum> specs)

void

JSVApp.siOpenDataOrFile(Object data, String name, Lst<Spectrum> specs, String url, int firstSpec, int lastSpec, boolean isAppend, String script, String id)
Uses of Spectrum in jspecview.appletjs

Method parameters in jspecview.appletjs with type arguments of type Spectrum

Modifier and Type

Method

Description

JSVPanel

JSVApplet.getJSVPanel(JSViewer viewer, Lst<Spectrum> specs)
Uses of Spectrum in jspecview.application

Methods in jspecview.application with parameters of type Spectrum

Modifier and Type

Method

Description

JSVPanel

JSpecView.siGetNewJSVPanel(Spectrum spec)

Method parameters in jspecview.application with type arguments of type Spectrum

Modifier and Type

Method

Description

JSVPanel

JSpecView.siGetNewJSVPanel2(Lst<Spectrum> specs)

void

JSpecView.siOpenDataOrFile(Object data, String name, Lst<Spectrum> specs, String url, int firstSpec, int lastSpec, boolean isAppend, String script, String id)
Uses of Spectrum in jspecview.common

Fields in jspecview.common declared as Spectrum

Modifier and Type

Field

Description

protected Spectrum

MeasurementData.spec

Spectrum

PeakInfo.spectrum

Methods in jspecview.common that return Spectrum

Modifier and Type

Method

Description

Spectrum

Spectrum.copy()

specifically for Abs/Trans conversion.

Spectrum

Spectrum.getConvertedSpectrum()

Spectrum

Spectrum.getCurrentSubSpectrum()

Spectrum

Measurement.getSpectrum()

Spectrum

MeasurementData.getSpectrum()

Spectrum

PanelData.getSpectrum()

Spectrum

PanelNode.getSpectrum()

Spectrum

PanelData.getSpectrumAt(int index)

static Spectrum

Spectrum.newSpectrum(Spectrum spectrum, Coordinate[] newXYCoords, String units)

copy spectrum with new coordinates

static Spectrum

Spectrum.taConvert(Spectrum spectrum, Spectrum.IRMode mode)

Methods in jspecview.common that return types with arguments of type Spectrum

Modifier and Type

Method

Description

Lst<Spectrum>

Spectrum.getSubSpectra()

Methods in jspecview.common with parameters of type Spectrum

Modifier and Type

Method

Description

void

PanelData.addHighlight(jspecview.common.GraphSet gs, double x1, double x2, Spectrum spec, int r, int g, int b, int a)

Add information about a region of the displayed spectrum to be highlighted applet only right now

boolean

Spectrum.addSubSpectrum(Spectrum spectrum, boolean forceSub)

adds an nD subspectrum and titles it "Subspectrum " These spectra can be iterated over using the UP and DOWN keys.

static boolean

Spectrum.allowSubSpec(Spectrum s1, Spectrum s2)

static boolean

Spectrum.areLinkableX(Spectrum s1, Spectrum s2)

static boolean

Spectrum.areLinkableY(Spectrum s1, Spectrum s2)

static boolean

Spectrum.areXScalesCompatible(Spectrum s1, Spectrum s2, boolean isSubspecCheck, boolean isLinkCheck)

void

PanelData.dialogsToFront(Spectrum spec)

void

PanelData.findX(Spectrum spec, double d)

static Annotation

Annotation.getColoredAnnotation(GenericGraphics g2d, Spectrum spec, Lst<String> args, Annotation lastAnnotation)

int

Visible.getColour(Spectrum spec, boolean useFitted)

Returns the integer color of a solution based on its visible spectrum.

JSVDialog

JSViewer.getDialog(Annotation.AType type, Spectrum spec)

static Lst<Annotation>

IntegralData.getIntegrationRatiosFromString(Spectrum spec, String key_values)

Parses x-coordinates and values from a string and returns them as IntegrationRatio objects

void

PanelData.initOne(Spectrum spectrum)

void

PanelData.jumpToSpectrum(Spectrum spec)

static Spectrum

Spectrum.newSpectrum(Spectrum spectrum, Coordinate[] newXYCoords, String units)

copy spectrum with new coordinates

void

PanelData.notifySubSpectrumChange(int isub, Spectrum spec)

protected Annotation

Annotation.setA(double x, double y, Spectrum spec, String text, boolean isPixels, boolean is2D, int offsetX, int offsetY)

ColoredAnnotation

ColoredAnnotation.setCA(double x, double y, Spectrum spec, String text, GenericColor color, boolean isPixels, boolean is2D, int offsetX, int offsetY)

void

Spectrum.setConvertedSpectrum(Spectrum spectrum)

Integral

Integral.setInt(double x1, double y1, Spectrum spec, double value, double x2, double y2)

Measurement

Measurement.setM1(double x, double y, Spectrum spec)

Measurement

Measurement.setPt2(Spectrum spec, boolean doSetPt2)

void

PanelData.setSpecForIRMode(Spectrum spec)

void

PanelData.setXPointers(Spectrum spec, double x1, Spectrum spec2, double x2)

static Spectrum

Spectrum.taConvert(Spectrum spectrum, Spectrum.IRMode mode)

Method parameters in jspecview.common with type arguments of type Spectrum

Modifier and Type

Method

Description

void

PanelData.addToList(int iSpec, Lst<Spectrum> list)

static double

Coordinate.getMaxX(Lst<Spectrum> spectra, ViewData vd)

Returns the maximum x value value from an array of arrays of Coordinates.

static double

Coordinate.getMaxYUser(Lst<Spectrum> spectra, ViewData vd)

Returns the maximum y value value from an array of arrays of Coordinates.

static double

Coordinate.getMinX(Lst<Spectrum> spectra, ViewData vd)

Returns the minimum x value value from an array of arrays of Coordinates.

static double

Coordinate.getMinYUser(Lst<Spectrum> spectra, ViewData vd)

Returns the minimum y value value from an array of arrays of Coordinates.

void

PanelData.initMany(Lst<Spectrum> spectra, int startIndex, int endIndex)

void

ViewData.newSpectrum(Lst<Spectrum> spectra)

int

JSViewer.openDataOrFile(Object data, String name, Lst<Spectrum> specs, String strUrl, int firstSpec, int lastSpec, boolean isAppend, String id)

static boolean

Spectrum.process(Lst<Spectrum> specs, Spectrum.IRMode irMode)

Constructors in jspecview.common with parameters of type Spectrum

Modifier

Constructor

Description

IntegralData(double integralMinY, double integralOffset, double integralRange, Spectrum spec)

IntegralData(Spectrum spec, Parameters p)

PeakData(Annotation.AType type, Spectrum spec)

Constructor parameters in jspecview.common with type arguments of type Spectrum

Modifier

Constructor

Description

ViewData(Lst<Spectrum> spectra, double yPt1, double yPt2, boolean isContinuous)

ViewData(Lst<Spectrum> spectra, double yPt1, double yPt2, int[] startList, int[] endList, boolean isContinuous, boolean is2D)
Uses of Spectrum in jspecview.dialog

Fields in jspecview.dialog declared as Spectrum

Modifier and Type

Field

Description

protected Spectrum

JSVDialog.spec

Methods in jspecview.dialog that return Spectrum

Modifier and Type

Method

Description

Spectrum

JSVDialog.getSpectrum()

Methods in jspecview.dialog with parameters of type Spectrum

Modifier and Type

Method

Description

JSVDialog

JSVDialog.setParams(String title, JSViewer viewer, Spectrum spec)

required initializer; from JSViewer

abstract void

DialogManager.showProperties(Object frame, Spectrum spectrum)

void

DialogManager.showSource(Object frame, Spectrum spec)
Uses of Spectrum in jspecview.export

Methods in jspecview.export with parameters of type Spectrum

Modifier and Type

Method

Description

String

AMLExporter.exportTheSpectrum(JSViewer viewer, ExportType mode, OC out, Spectrum spec, int startIndex, int endIndex, PanelData pd, boolean asBase64)

Exports the Spectrum that is displayed by JSVPanel to a file given by fileName If display is zoomed then export the current view

String

CMLExporter.exportTheSpectrum(JSViewer viewer, ExportType mode, OC out, Spectrum spec, int startIndex, int endIndex, PanelData pd, boolean asBase64)

Exports the Spectrum that is displayed by JSVPanel to a file given by fileName If display is zoomed then export the current view

String

Exporter.exportTheSpectrum(JSViewer viewer, ExportType mode, OC out, Spectrum spec, int startIndex, int endIndex, PanelData pd, boolean asBase64)

String

ExportInterface.exportTheSpectrum(String type, String path, Spectrum spec, int startIndex, int endIndex)

returns message if path is not null, otherwise full string of text (unsigned applet)

String

JDXExporter.exportTheSpectrum(JSViewer viewer, ExportType type, OC out, Spectrum spectrum, int startIndex, int endIndex, PanelData pd, boolean asBase64)

Exports spectrum in one of several formats

String

SVGExporter.exportTheSpectrum(JSViewer viewer, ExportType mode, OC out, Spectrum spec, int startIndex, int endIndex, PanelData pd, boolean asBase64)

Export a Graph as SVG to a file given by fileName
Uses of Spectrum in jspecview.java

Methods in jspecview.java with parameters of type Spectrum

Modifier and Type

Method

Description

static AwtPanel

AwtPanel.getPanelOne(JSViewer viewer, Spectrum spectrum)

Constructs a new JSVPanel

void

AwtDialogManager.showProperties(Object frame, Spectrum spectrum)

Method parameters in jspecview.java with type arguments of type Spectrum

Modifier and Type

Method

Description

static AwtPanel

AwtPanel.getPanelMany(JSViewer viewer, Lst<Spectrum> spectra)

Constructs a JSVPanel with List of spectra and corresponding start and end indices of data points that should be displayed
Uses of Spectrum in jspecview.js2d

Methods in jspecview.js2d with parameters of type Spectrum

Modifier and Type

Method

Description

void

JsDialogManager.showProperties(Object frame, Spectrum spectrum)

Looks a lot like Swing, right? :)

Method parameters in jspecview.js2d with type arguments of type Spectrum

Modifier and Type

Method

Description

static JsPanel

JsPanel.getPanelMany(JSViewer viewer, Lst<Spectrum> spectra)

Constructs a JSVPanel with List of spectra and corresponding start and end indices of data points that should be displayed
Uses of Spectrum in jspecview.source

Fields in jspecview.source declared as Spectrum

Modifier and Type

Field

Description

protected Spectrum

JDXDataObject.parent

Methods in jspecview.source that return Spectrum

Modifier and Type

Method

Description

Spectrum

JDXSource.getJDXSpectrum(int index)

Returns the Spectrum at a given index in the list

Spectrum[]

JDXSource.getSpectraAsArray()

Used in Android

Methods in jspecview.source that return types with arguments of type Spectrum

Modifier and Type

Method

Description

Lst<Spectrum>

JDXSource.getSpectra()

Returns the Vector of Spectra

Methods in jspecview.source with parameters of type Spectrum

Modifier and Type

Method

Description

void

JDXSource.addJDXSpectrum(String filePath, Spectrum spectrum, boolean forceSub)

Adds a Spectrum to the list

Method parameters in jspecview.source with type arguments of type Spectrum

Modifier and Type

Method

Description

static JDXSource

JDXSource.createView(Lst<Spectrum> specs)

Uses of Classjspecview.common.Spectrum

Uses of Spectrum in jspecview.api

Uses of Spectrum in jspecview.app

Uses of Spectrum in jspecview.appletjs

Uses of Spectrum in jspecview.application

Uses of Spectrum in jspecview.common

Uses of Spectrum in jspecview.dialog

Uses of Spectrum in jspecview.export

Uses of Spectrum in jspecview.java

Uses of Spectrum in jspecview.js2d

Uses of Spectrum in jspecview.source

Uses of Class
jspecview.common.Spectrum