Package jspecview.common

Class PanelData

java.lang.Object
jspecview.common.PanelData
All Implemented Interfaces:
EventManager
public class PanelData extends Object implements EventManager
JSVPanel class draws a plot from the data contained a instance of one or more GraphSet objects. A graph set includes one or more spectra of the same type -- 13C or 1H, for example. These are linked so that their expansions synchronize and, if linked to a 2D spectrum, so that their cursors reflect the cross-hairs of the 2D spectrum. So there is a stack of graph sets. The mouse is active only in one of these sets (PanelData.mouseSet), and within that, a specific spectrum (GraphSet.iSpectrumMovedTo). Clicking on the graph sets these as well
Author:
Debbie-Ann Facey, Khari A. Bryan, Craig A.D. Walters, Prof Robert J. Lancashire, Bob Hanson hansonr@stolaf.edu

  • Field Details

    • g2d

      public GenericGraphics g2d

    • g2d0

      public GenericGraphics g2d0

    • options

      public Hashtable<ScriptToken,Object> options

    • jsvp

      public JSVPanel jsvp

    • graphSets

      public Lst<jspecview.common.GraphSet> graphSets

    • currentSplitPoint

      public int currentSplitPoint

    • thisWidget

      public jspecview.common.PlotWidget thisWidget

    • coordClicked

      public Coordinate coordClicked

    • coordsClicked

      public Coordinate[] coordsClicked

    • defaultPrintHeight

      public static final int defaultPrintHeight
      See Also:

    • defaultPrintWidth

      public static final int defaultPrintWidth
      See Also:

    • topMargin

      public static final int topMargin
      See Also:

    • bottomMargin

      public static final int bottomMargin
      See Also:

    • leftMargin

      public static final int leftMargin
      See Also:

    • rightMargin

      public static final int rightMargin
      See Also:

    • ctrlPressed

      public boolean ctrlPressed

    • shiftPressed

      public boolean shiftPressed

    • drawXAxisLeftToRight

      public boolean drawXAxisLeftToRight

    • isIntegralDrag

      public boolean isIntegralDrag

    • xAxisLeftToRight

      public boolean xAxisLeftToRight

    • scalingFactor

      public int scalingFactor

    • integralShiftMode

      public int integralShiftMode

    • left

      public int left

    • coordStr

      public String coordStr

    • startupPinTip

      public String startupPinTip

    • isPrinting

      public boolean isPrinting

    • gridOn

      public boolean gridOn

    • titleOn

      public boolean titleOn

    • peakTabsOn

      public boolean peakTabsOn

    • mouseX

      public int mouseX

    • mouseY

      public int mouseY

    • xPixelClicked

      public int xPixelClicked

    • coordinatesColor

      public GenericColor coordinatesColor

    • gridColor

      public GenericColor gridColor

    • integralPlotColor

      public GenericColor integralPlotColor

    • peakTabColor

      public GenericColor peakTabColor

    • peakOverColor

      public GenericColor peakOverColor

    • plotAreaColor

      public GenericColor plotAreaColor

    • scaleColor

      public GenericColor scaleColor

    • titleColor

      public GenericColor titleColor

    • unitsColor

      public GenericColor unitsColor

    • highlightColor

      public GenericColor highlightColor

    • zoomBoxColor

      public GenericColor zoomBoxColor

    • zoomBoxColor2

      public GenericColor zoomBoxColor2

    • BLACK

      public GenericColor BLACK

    • bgcolor

      public GenericColor bgcolor

    • optionsSaved

      public Hashtable<ScriptToken,Object> optionsSaved

    • unitsDrawn

      public boolean unitsDrawn

  • Constructor Details

  • Method Details

    • addListener

      public void addListener(PanelListener listener)

    • getCurrentGraphSet

      public jspecview.common.GraphSet getCurrentGraphSet()

    • dispose

      public void dispose()

    • setBoolean

      public void setBoolean(ScriptToken st, boolean isTrue)

    • getBoolean

      public boolean getBoolean(ScriptToken st)

    • getDisplay1D

      public boolean getDisplay1D()

    • setTaintedAll

      public void setTaintedAll()

    • initOne

      public void initOne(Spectrum spectrum)

    • initMany

      public void initMany(Lst<Spectrum> spectra, int startIndex, int endIndex)

    • findMatchingPeakInfo

      public PeakInfo findMatchingPeakInfo(PeakInfo pi)

    • getNumberOfGraphSets

      public int getNumberOfGraphSets()
      Returns the Number of Graph sets
      Returns:
      the Number of graph sets

    • getTitle

      public String getTitle()
      Returns the title displayed on the graph
      Returns:
      the title displayed on the graph

    • refresh

      public void refresh()

    • setTitle

      public void setTitle(String title)

    • addAnnotation

      public void addAnnotation(Lst<String> tokens)

    • addPeakHighlight

      public void addPeakHighlight(PeakInfo peakInfo)

    • selectPeakByFileIndex

      public PeakInfo selectPeakByFileIndex(String filePath, String index, String atomKey)

    • setPlotColors

      public void setPlotColors(GenericColor[] colors)

    • selectSpectrum

      public void selectSpectrum(String filePath, String type, String model, boolean andCurrent)

    • hasFileLoaded

      public boolean hasFileLoaded(String filePath)

    • clearAllView

      public void clearAllView()
      Clears all views in the zoom list

    • drawGraph

      public void drawGraph(Object gMain, Object gFront, Object gRear, int width, int height, boolean addFilePath, boolean addBorder)
      Draws the Spectrum to the panel
      Parameters:
      gMain - the main Graphics object
      gFront - the Graphics object for top-object writing
      gRear -
      width - the width to be drawn in pixels
      height - the height to be drawn in pixels
      addFilePath -
      addBorder -

    • drawCoordinates

      public void drawCoordinates(Object g, int top, int x, int y)
      Parameters:
      g -
      top -
      x -
      y -

    • setFont

      public Font setFont(Object g, int width, int style, float size, boolean isLabel)

    • printFilePath

      public void printFilePath(Object g, int x, int y, String s)

    • printVersion

      public void printVersion(Object g, int pageHeight)

    • drawTitle

      public void drawTitle(Object g, int y, int pageWidth, String title)
      Draws Title
      Parameters:
      g -
      y - the height to be drawn in pixels -- after scaling
      pageWidth - the width to be drawn in pixels -- after scaling
      title -

    • selectFromEntireSet

      public void selectFromEntireSet(int iSpec)
      sets bsSelected to the specified pointer from "select 3.1*1"
      Parameters:
      iSpec -

    • addToList

      public void addToList(int iSpec, Lst<Spectrum> list)

    • scaleSelectedBy

      public void scaleSelectedBy(double f)

    • jumpToSpectrum

      public void jumpToSpectrum(Spectrum spec)

    • jumpToSpectrumIndex

      public void jumpToSpectrumIndex(int index, boolean doSetSpec)

    • splitStack

      public void splitStack(boolean doSplit)

    • getNumberOfSpectraInCurrentSet

      public int getNumberOfSpectraInCurrentSet()

    • getSourceID

      public String getSourceID()

    • getStartingPointIndex

      public int getStartingPointIndex(int index)

    • getEndingPointIndex

      public int getEndingPointIndex(int index)

    • haveSelectedSpectrum

      public boolean haveSelectedSpectrum()

    • getShowAnnotation

      public boolean getShowAnnotation(Annotation.AType type)

    • showAnnotation

      public void showAnnotation(Annotation.AType type, Boolean tfToggle)

    • setYStackOffsetPercent

      public void setYStackOffsetPercent(int offset)

    • setSpectrum

      public void setSpectrum(int iSpec, boolean isSplit)

    • getSpectrum

      public Spectrum getSpectrum()

    • setSpecForIRMode

      public void setSpecForIRMode(Spectrum spec)

    • isShowAllStacked

      public boolean isShowAllStacked()

    • getCurrentSpectrumIndex

      public int getCurrentSpectrumIndex()

    • getSpectrumAt

      public Spectrum getSpectrumAt(int index)

    • addHighlight

      public void addHighlight(jspecview.common.GraphSet gs, double x1, double x2, Spectrum spec, int r, int g, int b, int a)
      Add information about a region of the displayed spectrum to be highlighted applet only right now
      Parameters:
      gs -
      x1 - the x value of the coordinate where the highlight should start
      x2 - the x value of the coordinate where the highlight should end
      spec -
      r -
      g -
      b -
      a -

    • removeHighlight

      public void removeHighlight(double x1, double x2)
      Remove the highlight specified by the starting and ending x value
      Parameters:
      x1 - the x value of the coordinate where the highlight started
      x2 - the x value of the coordinate where the highlight ended

    • removeAllHighlights

      public void removeAllHighlights()
      Removes all highlights from the display

    • setZoom

      public void setZoom(double x1, double y1, double x2, double y2)

    • resetView

      public void resetView()
      Resets the spectrum to it's original view

    • previousView

      public void previousView()
      Displays the previous view zoomed

    • nextView

      public void nextView()
      Displays the next view zoomed

    • getSelectedIntegral

      public Integral getSelectedIntegral()

    • advanceSubSpectrum

      public void advanceSubSpectrum(int dir)

    • setSelectedIntegral

      public void setSelectedIntegral(double val)

    • scaleYBy

      public void scaleYBy(double f)

    • toPeak

      public void toPeak(int i)

    • getClickedCoordinate

      public Coordinate getClickedCoordinate()
      Returns the spectrum coordinate of the point on the display that was clicked
      Returns:
      the spectrum coordinate of the point on the display that was clicked

    • getPickedCoordinates

      public boolean getPickedCoordinates(Coordinate coord, Coordinate actualCoord)
      click event processing
      Parameters:
      coord -
      actualCoord -
      Returns:
      true if a coordinate was picked and fills in coord and actualCoord

    • shiftSpectrum

      public boolean shiftSpectrum(int mode, double xOld, double xNew)
      shifts xyCoords for a spectrum by the specified amount
      Parameters:
      mode -
      xOld - old position or NaN
      xNew - NaN or new position
      Returns:
      true if successful

    • findX

      public void findX(Spectrum spec, double d)

    • setXPointers

      public void setXPointers(Spectrum spec, double x1, Spectrum spec2, double x2)

    • isCurrentGraphSet

      public boolean isCurrentGraphSet(jspecview.common.GraphSet graphSet)

    • repaint

      public void repaint()

    • setToolTipText

      public void setToolTipText(String s)

    • setHighlightColor

      public void setHighlightColor(GenericColor color)

    • notifySubSpectrumChange

      public void notifySubSpectrumChange(int isub, Spectrum spec)
      Parameters:
      isub - -1 indicates direction if no subspectra or subspectrum index if subspectra
      spec - null indicates no subspectra

    • notifyPeakPickedListeners

      public void notifyPeakPickedListeners(PeakPickEvent p)
      Notifies CoordinatePickedListeners
      Parameters:
      p -

    • notifyListeners

      public void notifyListeners(Object eventObj)

    • escapeKeyPressed

      public void escapeKeyPressed(boolean isDEL)

    • hasFocus

      public boolean hasFocus()

    • isMouseUp

      public boolean isMouseUp()

    • clearMouseSet

      public void clearMouseSet(jspecview.common.GraphSet gs)

    • doMouseMoved

      public void doMouseMoved(int xPixel, int yPixel)

    • doMouseClicked

      public void doMouseClicked(int xPixel, int yPixel, boolean isControlDown)

    • doMousePressed

      public void doMousePressed(int xPixel, int yPixel)

    • doMouseDragged

      public void doMouseDragged(int xPixel, int yPixel)

    • doMouseReleased

      public void doMouseReleased(int xPixel, int yPixel, boolean isButton1)

    • hasCurrentMeasurements

      public boolean hasCurrentMeasurements(Annotation.AType type)

    • getDialog

      public AnnotationData getDialog(Annotation.AType type)

    • addDialog

      public void addDialog(int iSpec, Annotation.AType type, AnnotationData dialog)

    • getPeakListing

      public void getPeakListing(Parameters p, Boolean tfToggle)

    • checkIntegral

      public void checkIntegral(Parameters parameters, String value)

    • setIntegrationRatios

      public void setIntegrationRatios(String value)
      DEPRECATED Sets the integration ratios that will be displayed
      Parameters:
      value -

    • getView

      public ScaleData getView()

    • closeAllDialogsExcept

      public void closeAllDialogsExcept(Annotation.AType type)

    • removeDialog

      public void removeDialog(JSVDialog dialog)

    • normalizeIntegral

      public void normalizeIntegral()

    • getDrawTitle

      public String getDrawTitle(boolean isPrinting, int iSpec)

    • linkSpectra

      public void linkSpectra(PanelData.LinkMode mode)

    • doZoomLinked

      public void doZoomLinked(jspecview.common.GraphSet graphSet, double initX, double finalX, boolean addZoom, boolean checkRange, boolean is1d)

    • clearLinkViews

      public void clearLinkViews(jspecview.common.GraphSet graphSet)

    • setlinkedXMove

      public void setlinkedXMove(jspecview.common.GraphSet graphSet, double x, boolean isX2)

    • set2DCrossHairsLinked

      public void set2DCrossHairsLinked(jspecview.common.GraphSet graphSet, double x, double y, boolean isLocked)

    • dialogsToFront

      public void dialogsToFront(Spectrum spec)

    • setColor

      public void setColor(ScriptToken st, GenericColor color)

    • getColor

      public GenericColor getColor(ScriptToken whatColor)

    • getOverlayLegendData

      public Object[][] getOverlayLegendData()

    • setColorOrFont

      public void setColorOrFont(ColorParameters params, ScriptToken st)

    • getCurrentPlotColor

      public GenericColor getCurrentPlotColor(int i)

    • setPrint

      public void setPrint(PrintLayout pl, String fontName)

    • setDefaultPrintOptions

      public void setDefaultPrintOptions(PrintLayout pl)

    • showDialog

      public JSVDialog showDialog(Annotation.AType type)

    • printPdf

      public void printPdf(GenericGraphics pdfCreator, PrintLayout pl)
      from jspecview.export.PDFCreator -- does not use iText --
      Parameters:
      pdfCreator -
      pl -

    • print

      public int print(Object g, double height, double width, double x, double y, double paperHeight, double paperWidth, boolean isPortrait, int pageIndex)

    • keyPressed

      public boolean keyPressed(int code, int modifiers)
      Specified by:
      keyPressed in interface EventManager

    • keyReleased

      public void keyReleased(int keyCode)
      Specified by:
      keyReleased in interface EventManager

    • keyTyped

      public boolean keyTyped(int ch, int mods)
      Specified by:
      keyTyped in interface EventManager

    • mouseAction

      public void mouseAction(int mode, long time, int x, int y, int countIgnored, int buttonMods)
      Specified by:
      mouseAction in interface EventManager

    • checkMod

      public boolean checkMod(int buttonMods, int mask)

    • checkKeyControl

      public void checkKeyControl(int keyCode, boolean isPressed)

    • updateControlPressed

      public boolean updateControlPressed(int mods)

    • mouseEnterExit

      public void mouseEnterExit(long time, int x, int y, boolean isExit)
      Specified by:
      mouseEnterExit in interface EventManager

    • setSolutionColor

      public void setSolutionColor(String what)

    • setIRMode

      public void setIRMode(Spectrum.IRMode mode, String type)

    • closeSpectrum

      public void closeSpectrum()