Package jme

Class JME

java.lang.Object
java.awt.Component
java.awt.Container
javax.swing.JComponent
javax.swing.JPanel
jme.JME
All Implemented Interfaces:
KeyListener, MouseListener, MouseMotionListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible
Direct Known Subclasses:
JmolJME
public class JME extends JPanel implements MouseListener, KeyListener, MouseMotionListener
See Also:

  • Field Details

    • myFrame

      public JFrame myFrame

    • application

      protected boolean application

    • infoText

      protected String infoText

    • bwMode

      protected boolean bwMode

    • runsmi

      protected boolean runsmi

    • canonize

      protected boolean canonize

    • stereo

      protected boolean stereo

    • multipart

      protected boolean multipart

    • xButton

      protected boolean xButton

    • rButton

      protected boolean rButton

    • showHydrogens

      protected boolean showHydrogens

    • query

      protected boolean query

    • reaction

      protected boolean reaction

    • autoez

      protected boolean autoez

    • writesmi

      protected boolean writesmi

    • writemi

      protected boolean writemi

    • writemol

      protected boolean writemol

    • number

      protected boolean number

    • star

      protected boolean star

    • autonumber

      protected boolean autonumber

    • jmeh

      protected boolean jmeh

    • depict

      protected boolean depict

    • depictBorder

      protected boolean depictBorder

    • keepHydrogens

      protected boolean keepHydrogens

    • nocenter

      protected boolean nocenter

    • polarnitro

      protected boolean polarnitro

    • showAtomNumbers

      protected boolean showAtomNumbers

    • doMenu

      protected boolean doMenu

    • movePossible

      protected boolean movePossible

    • newMolecule

      protected boolean newMolecule

    • afterClear

      protected boolean afterClear

    • mouseShift

      protected boolean mouseShift

    • dyMode

      protected boolean dyMode

    • mol

      public JMEmol mol

    • nmols

      public int nmols

    • mols

      protected JMEmol[] mols

    • doTags

      protected boolean doTags

    • webme

      protected boolean webme

    • apointx

      public int[] apointx

    • apointy

      public int[] apointy

    • bpointx

      public int[] bpointx

    • bpointy

      public int[] bpointy

    • revertStereo

      protected boolean revertStereo

    • relativeStereo

      protected boolean relativeStereo

    • allHs

      protected boolean allHs

    • markUsed

      protected boolean markUsed

    • embedded

      protected boolean embedded

  • Constructor Details

    • JME

      public JME()

    • JME

      public JME(JFrame frame, boolean embedded)

  • Method Details

    • setFrame

      public void setFrame(JFrame frame)

    • main

      public static void main(String[] args)

    • getColor

      public Color getColor()

    • activateQuery

      public void activateQuery()

    • initialize

      protected void initialize()

    • start

      public void start()

    • stop

      public void stop()

    • ping

      public void ping()

    • smiles

      public String smiles()

    • nonisomericSmiles

      public String nonisomericSmiles()

    • reset

      public void reset()

    • clear

      public void clear()

    • jmeFile

      public String jmeFile()

    • readMolecule

      public void readMolecule(String molecule)

    • setTemplate

      public void setTemplate(String t, String name)

    • molFile

      public String molFile()

    • readMolFile

      public void readMolFile(String s)

    • setMol

      protected boolean setMol(boolean checkMultipart)

    • setSubstituent

      public void setSubstituent(String s)

    • options

      public void options(String parameters)

    • setText

      public void setText(String text)

    • showAtomNumbers

      public void showAtomNumbers()

    • hasPrevious

      public boolean hasPrevious()

    • getPreviousMolecule

      public void getPreviousMolecule()

    • paint

      public void paint(Graphics g)
      Overrides:
      paint in class JComponent

    • update

      public void update(Graphics g)
      Overrides:
      update in class JComponent

    • paintMolecularArea

      protected void paintMolecularArea(BufferedImage img)

    • mouseDown

      public boolean mouseDown(MouseEvent e, int x, int y)

    • doAction

      protected boolean doAction()

    • doNewMoleculeAction

      protected void doNewMoleculeAction(int x, int y)

    • doMouseBondAction

      protected void doMouseBondAction()

    • doMouseAtomAction

      protected boolean doMouseAtomAction()

    • mouseUp

      public boolean mouseUp(MouseEvent e, int x, int y)
      Parameters:
      e -
      x -
      y -
      Returns:
      ignored

    • mouseDrag

      public boolean mouseDrag(MouseEvent e, int x, int y)

    • mouseMove

      public boolean mouseMove(MouseEvent e, int x, int y)
      Parameters:
      e -
      x -
      y -
      Returns:
      ignored

    • keyDown

      public boolean keyDown(KeyEvent e, int key)

    • updateMark

      protected void updateMark(int n)

    • mouseDragged

      public void mouseDragged(MouseEvent e)
      Specified by:
      mouseDragged in interface MouseMotionListener

    • mouseMoved

      public void mouseMoved(MouseEvent e)
      Specified by:
      mouseMoved in interface MouseMotionListener

    • keyTyped

      public void keyTyped(KeyEvent e)
      Specified by:
      keyTyped in interface KeyListener

    • keyPressed

      public void keyPressed(KeyEvent e)
      Specified by:
      keyPressed in interface KeyListener

    • keyReleased

      public void keyReleased(KeyEvent e)
      Specified by:
      keyReleased in interface KeyListener

    • mouseClicked

      public void mouseClicked(MouseEvent e)
      Specified by:
      mouseClicked in interface MouseListener

    • mousePressed

      public void mousePressed(MouseEvent e)
      Specified by:
      mousePressed in interface MouseListener

    • mouseReleased

      public void mouseReleased(MouseEvent e)
      Specified by:
      mouseReleased in interface MouseListener

    • mouseEntered

      public void mouseEntered(MouseEvent e)
      Specified by:
      mouseEntered in interface MouseListener

    • mouseExited

      public void mouseExited(MouseEvent e)
      Specified by:
      mouseExited in interface MouseListener