Uses of Class javajs.util.SB (Jmol 16.3.55 API)

Uses of SB in javajs.api

Methods in javajs.api that return SB

Modifier and Type

Method

Description

SB

GenericBinaryDocument.getAllDataFiles(String binaryFileList, String firstFile)
Uses of SB in javajs.util

Methods in javajs.util that return SB

Modifier and Type

Method

Description

SB

SB.append(String s)

SB

SB.appendB(boolean b)

SB

SB.appendC(char c)

SB

SB.appendD(double d)

SB

SB.appendF(float f)

note that JavaScript could drop off the ".0" in "1.0"

SB

SB.appendI(int i)

SB

SB.appendO(Object data)

SB

SB.appendSB(SB buf)

SB

CompoundDocument.getAllData()

SB

BinaryDocument.getAllDataFiles(String binaryFileList, String firstFile)

SB

CompoundDocument.getAllDataFiles(String binaryFileList, String firstFile)

static SB

Base64.getBase64(byte[] bytes)

SB

CompoundDocument.getFileAsString(String entryName)

static SB

SB.newN(int n)

static SB

SB.newS(String s)

Methods in javajs.util with parameters of type SB

Modifier and Type

Method

Description

void

ZipData.addTo(GenericZipTools jzt, SB data)

static void

XmlUtil.appendAttrib(SB sb, Object name, Object value)

static void

XmlUtil.appendCdata(SB sb, String name, Object[] attributes, String data)

" will convert ]]> to ]] >

SB

SB.appendSB(SB buf)

static void

XmlUtil.appendTag(SB sb, String name, Object data)

standard data" standard "

static void

XmlUtil.appendTagAll(SB sb, String name, Object[] attributes, Object data, boolean isCdata, boolean doClose)

static void

XmlUtil.appendTagObj(SB sb, String name, Object[] attributes, Object data)

standard data"

static void

XmlUtil.closeTag(SB sb, String name)

static byte[]

Rdr.getBytesFromSB(SB sb)

Allow for base64-encoding check.

static boolean

Rdr.isBase64(SB sb)

static void

PT.leftJustify(SB s, String s1, String s2)

static void

XmlUtil.openDocument(SB data)

static void

XmlUtil.openTag(SB sb, String name)

static void

XmlUtil.openTagAttr(SB sb, String name, Object[] attributes)

static void

PT.rightJustify(SB s, String s1, String s2)
Uses of SB in jspecview.source

Fields in jspecview.source declared as SB

Modifier and Type

Field

Description

protected SB

XMLReader.errorLog

protected SB

XMLReader.errorLog

Methods in jspecview.source with parameters of type SB

Modifier and Type

Method

Description

Coordinate[]

JDXDecompressor.decompressData(SB errorLog)

Determines the type of compression, decompresses the data and stores coordinates in an array to be returned
Uses of SB in org.jmol.adapter.readers.spartan

Methods in org.jmol.adapter.readers.spartan that return SB

Modifier and Type

Method

Description

SB

SpartanUtil.getData(InputStream is, String[] zipDirectory)

called by SmarterJmolAdapter via JmolUtil to open a Spartan directory and get all the needed data as a string.
Uses of SB in org.jmol.adapter.readers.xml

Fields in org.jmol.adapter.readers.xml declared as SB

Modifier and Type

Field

Description

protected SB

XmlReader.chars
Uses of SB in org.jmol.adapter.writers

Subclasses of SB in org.jmol.adapter.writers

Modifier and Type

Class

Description

class

QCJSONWriter.SparseArray

Fields in org.jmol.adapter.writers declared as SB

Modifier and Type

Field

Description

protected SB

CIFWriter.jmol_atoms

Methods in org.jmol.adapter.writers that return SB

Modifier and Type

Method

Description

protected SB

CIFWriter.appendKey(SB sb, String key, int width)

Methods in org.jmol.adapter.writers with parameters of type SB

Modifier and Type

Method

Description

protected static void

CMLWriter.addAttribute(SB sb, String key, String val)

protected static void

CMLWriter.addAttributes(SB sb, String[] attributes)

boolean

MOLWriter.addMolFile(String title, int iModel, SB mol, BS bsAtoms, BS bsBonds, boolean asV3000, boolean asJSON, boolean noAromatic, Quat q, boolean is2d)

protected void

CIFWriter.append3(SB sb, T3 a)

protected static void

CMLWriter.appendEmptyTag(SB sb, String name, String[] attributes)

protected static void

CIFWriter.appendField(SB sb, String val, int width)

protected SB

CIFWriter.appendKey(SB sb, String key, int width)

protected static void

CMLWriter.closeTag(SB sb, String name)

static void

CMLWriter.openDocument(SB sb)

protected static void

CMLWriter.openTag(SB sb, String name)

protected static void

CMLWriter.startOpenTag(SB sb, String name)

protected static void

CMLWriter.terminateEmptyTag(SB sb)

protected static void

CMLWriter.terminateTag(SB sb)

protected int

CIFWriter.writeAtomSite(SB sb)

protected int

FSG2SCIFConverter.writeAtomSite(SB sb)

protected boolean

CIFWriter.writeChecked(SB output, String val)

see https://github.com/rcsb/ciftools-java/blob/master/src/main/java/org/rcsb/cif/text/TextCifWriter.java

protected void

CIFWriter.writeHeader(SB sb)

protected void

FSG2SCIFConverter.writeHeader(SB sb)

protected void

CIFWriter.writeMultiline(SB output, String val)

protected void

CIFWriter.writeOperations(SB sb)

protected void

FSG2SCIFConverter.writeOperations(SB sb)

protected void

CIFWriter.writeParams(SB sb)
Uses of SB in org.jmol.api

Methods in org.jmol.api with parameters of type SB

Modifier and Type

Method

Description

void

JmolScriptEvaluator.evaluateCompiledScript(Object[] params, boolean isSyntaxCheck, boolean isSyntaxAndFileCheck, boolean historyDisabled, boolean listCommands, SB outputBuffer, boolean allowThreads)

boolean

JmolDataManager.getDataState(JmolStateCreator stateCreator, SB commands)

boolean

JmolNMRInterface.getState(SB sb)

boolean

SymmetryInterface.getState(ModelSet ms, int modelIndex, SB commands)

void

JmolScriptEvaluator.runScriptBuffer(String string, SB outputBuffer, boolean isFuncReturn)

String

SymmetryInterface.staticTransformSpaceGroup(BS bs, String cleg, Object paramsOrUC, SB sb)
Uses of SB in org.jmol.awtjs.swing

Methods in org.jmol.awtjs.swing with parameters of type SB

Modifier and Type

Method

Description

void

AbstractTableModel.toHTML(SB sb, String id, BS bsSelectedRows)
Uses of SB in org.jmol.jvxl.calc

Fields in org.jmol.jvxl.calc declared as SB

Modifier and Type

Field

Description

protected SB

MarchingCubes.edgeData
Uses of SB in org.jmol.jvxl.data

Fields in org.jmol.jvxl.data declared as SB

Modifier and Type

Field

Description

SB

JvxlData.sbOut

Methods in org.jmol.jvxl.data with parameters of type SB

Modifier and Type

Method

Description

static void

JvxlCoder.appendContourTriangleIntersection(int type, float f1, float f2, SB fData)

appends an integer (3, 5, or 6) representing two sides of a triangle ABC -- AB/BC(3), AB/CA(5), or BC/CA(6) -- along with two fractions along the edges for the intersection point base-90-encoded.

static void

JvxlCoder.jvxlAppendEncodedNumber(SB sb, int n, int base, int range)

static void

JvxlCoder.jvxlCreateHeader(VolumeData v, SB sb)

Creates a two-line header for the XJVXL file.

static void

JvxlCoder.jvxlCreateHeaderWithoutTitleOrAtoms(VolumeData v, SB bs)

static int

JvxlCoder.jvxlEncodeBitSet0(BS bs, int nPoints, SB sb)

static int

JvxlCoder.jvxlEncodeBitSetBuffer(BS bs, int nPoints, SB sb)
Uses of SB in org.jmol.jvxl.readers

Fields in org.jmol.jvxl.readers declared as SB

Modifier and Type

Field

Description

protected SB

SurfaceReader.fractionData

protected SB

SurfaceReader.jvxlFileHeaderBuffer

SB

Parameters.sbOut
Uses of SB in org.jmol.modelkit

Methods in org.jmol.modelkit with parameters of type SB

Modifier and Type

Method

Description

void

ModelKit.cmdAssignSpaceGroup(String transform, SB sb, String cmd, float packing, boolean doDraw)

MODELKIT SPACEGROUP
Uses of SB in org.jmol.modelset

Fields in org.jmol.modelset declared as SB

Modifier and Type

Field

Description

SB

Model.loadScript

Methods in org.jmol.modelset with parameters of type SB

Modifier and Type

Method

Description

void

Text.appendFontCmd(SB s)

int

ModelSet.autoBondBs4(BS bsA, BS bsB, BS bsExclude, BS bsBonds, short mad, boolean preJmol11_9_24, SB state)

int[]

ModelSet.makeConnections2(float minD, float maxD, int order, int connectOperation, BS bsA, BS bsB, BS bsBonds, boolean isBonds, boolean addGroup, float energy, SB state)

Constructors in org.jmol.modelset with parameters of type SB

Modifier

Constructor

Description

ModelLoader(Viewer vwr, String modelSetName, SB loadScript, Object asc, ModelSet modelSet0, BS bsNew)
Uses of SB in org.jmol.modelsetbio

Methods in org.jmol.modelsetbio with parameters of type SB

Modifier and Type

Method

Description

void

BioModel.getDefaultLargePDBRendering(SB sb, int maxAtoms)

void

BioModel.getPdbData(String type, char ctype, boolean isDraw, BS bsSelected, OC out, LabelToken[] tokens, SB pdbCONECT, BS bsWritten)
Uses of SB in org.jmol.quantum

Methods in org.jmol.quantum with parameters of type SB

Modifier and Type

Method

Description

boolean

NMRCalculation.getState(SB sb)
Uses of SB in org.jmol.script

Fields in org.jmol.script declared as SB

Modifier and Type

Field

Description

SB

ScriptContext.outputBuffer

SB

ScriptEval.outputBuffer

Methods in org.jmol.script with parameters of type SB

Modifier and Type

Method

Description

void

ScriptEval.evaluateCompiledScript(Object[] params, boolean isCmdLine_c_or_C_Option, boolean isCmdLine_C_Option, boolean historyDisabled, boolean listCommands, SB outputBuffer, boolean allowThreads)

void

ScriptEval.runBufferedSafely(String script, SB outputBuffer)

void

ScriptEval.runScriptBuffer(String script, SB outputBuffer, boolean isFuncReturn)

runs a script immediately and sends selected output to a provided SB
Uses of SB in org.jmol.scriptext

Methods in org.jmol.scriptext with parameters of type SB

Modifier and Type

Method

Description

int

CmdExt.getLoadSymmetryParams(int i, SB sOptions, Map<String,Object> htParams)
Uses of SB in org.jmol.shape

Methods in org.jmol.shape with parameters of type SB

Modifier and Type

Method

Description

protected static void

Shape.appendCmd(SB s, String cmd)

String

Axes.getAxesState(SB sb)
Uses of SB in org.jmol.shapespecial

Methods in org.jmol.shapespecial with parameters of type SB

Modifier and Type

Method

Description

void

Polyhedron.list(SB sb)
Uses of SB in org.jmol.shapesurface

Methods in org.jmol.shapesurface with parameters of type SB

Modifier and Type

Method

Description

static void

IsosurfaceMesh.addContourPoints(Lst<Object> v, BS bsContour, int i, SB fData, T3[] vertices, float[] vertexValues, int iA, int iB, int iC, float value)

static void

IsosurfaceMesh.setContourVector(Lst<Object> v, int nPolygons, BS bsContour, float value, short colix, int color, SB fData)
Uses of SB in org.jmol.symmetry

Methods in org.jmol.symmetry that return SB

Modifier and Type

Method

Description

protected static SB

WyckoffFinder.wrap(String xyz, SB sb)

Just wrap the coordinate with parentheses.

Methods in org.jmol.symmetry with parameters of type SB

Modifier and Type

Method

Description

boolean

Symmetry.getState(ModelSet ms, int modelIndex, SB commands)

String

Symmetry.staticTransformSpaceGroup(BS bs, String cleg, Object paramsOrUC, SB sb)

protected static SB

WyckoffFinder.wrap(String xyz, SB sb)

Just wrap the coordinate with parentheses.
Uses of SB in org.jmol.util

Fields in org.jmol.util declared as SB

Modifier and Type

Field

Description

SB

MeshSurface.slabOptions

Methods in org.jmol.util with parameters of type SB

Modifier and Type

Method

Description

void

JSONWriter.writeString(String str, SB sbSym)
Uses of SB in org.jmol.viewer

Methods in org.jmol.viewer with parameters of type SB

Modifier and Type

Method

Description

void

ChimeMessenger.getAllChimeInfo(SB sb)

void

JmolChimeMessenger.getAllChimeInfo(SB sb)

boolean

DataManager.getDataState(JmolStateCreator sc, SB sb)

void

StateCreator.getInlineData(SB loadScript, String strModel, boolean isAppend, Integer appendToModelIndex, String loadFilter)

String

Viewer.loadModelFromFile(String fullPathName, String fileName, String[] fileNames, Object reader, boolean isAppend, Map<String,Object> htParams, SB loadScript, SB sOptions, int tokType, String filecat)

Used by the ScriptEvaluator LOAD command to open one or more files.

void

ChimeMessenger.showHash(SB outputBuffer, String s)

#xxxx command output

void

JmolChimeMessenger.showHash(SB outputBuffer, String msg)

Uses of Classjavajs.util.SB

Uses of SB in javajs.api

Uses of SB in javajs.util

Uses of SB in jspecview.source

Uses of SB in org.jmol.adapter.readers.spartan

Uses of SB in org.jmol.adapter.readers.xml

Uses of SB in org.jmol.adapter.writers

Uses of SB in org.jmol.api

Uses of SB in org.jmol.awtjs.swing

Uses of SB in org.jmol.jvxl.calc

Uses of SB in org.jmol.jvxl.data

Uses of SB in org.jmol.jvxl.readers

Uses of SB in org.jmol.modelkit

Uses of SB in org.jmol.modelset

Uses of SB in org.jmol.modelsetbio

Uses of SB in org.jmol.quantum

Uses of SB in org.jmol.script

Uses of SB in org.jmol.scriptext

Uses of SB in org.jmol.shape

Uses of SB in org.jmol.shapespecial

Uses of SB in org.jmol.shapesurface

Uses of SB in org.jmol.symmetry

Uses of SB in org.jmol.util

Uses of SB in org.jmol.viewer

Uses of Class
javajs.util.SB